Stochastic Simulation Algorithms in Python
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A
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C
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D
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F
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G
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H
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I
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K
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L
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M
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P
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R
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S
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T
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V
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W
A
args (cayenne.model_io.ModelIO attribute)
C
cayenne (module)
cayenne.algorithms (module)
cayenne.algorithms.direct (module)
,
[1]
cayenne.algorithms.tau_adaptive (module)
,
[1]
cayenne.algorithms.tau_leaping (module)
,
[1]
cayenne.model_io (module)
cayenne.results (module)
cayenne.simulation (module)
cayenne.utils (module)
chem_flag (cayenne.model_io.ModelIO attribute)
ChemFlagError
D
direct (class in cayenne.algorithms)
(in module cayenne.algorithms.direct)
F
final (cayenne.results.Results attribute)
G
get_kstoc (in module cayenne.utils)
get_species() (cayenne.results.Results method)
get_state() (cayenne.results.Results method)
H
HOR (cayenne.simulation.Simulation attribute)
I
init_state (cayenne.model_io.ModelIO attribute)
InitialStateError
K
k_det (cayenne.model_io.ModelIO attribute)
L
load_model() (cayenne.simulation.Simulation class method)
M
ModelError
ModelIO (class in cayenne.model_io)
P
plot() (cayenne.simulation.Simulation method)
,
[1]
prod_stoic (cayenne.model_io.ModelIO attribute)
py_roulette_selection (in module cayenne.utils)
R
RateConstantError
react_stoic (cayenne.model_io.ModelIO attribute)
results (cayenne.simulation.Simulation attribute)
,
[1]
,
[2]
Results (class in cayenne.results)
,
[1]
S
simulate() (cayenne.simulation.Simulation method)
,
[1]
Simulation (class in cayenne.simulation)
,
[1]
T
tau_adaptive (class in cayenne.algorithms)
(in module cayenne.algorithms.tau_adaptive)
tau_leaping (class in cayenne.algorithms)
(in module cayenne.algorithms.tau_leaping)
translate_sbml() (cayenne.model_io.ModelIO class method)
V
volume (cayenne.model_io.ModelIO attribute)
VolumeError
W
wrapper() (in module cayenne.simulation)
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